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- bin/hicpro_merge_validpairs.sh 4 additions, 4 deletionsbin/hicpro_merge_validpairs.sh
- bin/src/cutsite_trimming.cpp 67 additions, 71 deletionsbin/src/cutsite_trimming.cpp
- conf/igenomes.config 71 additions, 71 deletionsconf/igenomes.config
- conf/modules.config 30 additions, 30 deletionsconf/modules.config
- conf/test.config 1 addition, 1 deletionconf/test.config
- lib/WorkflowHic.groovy 2 additions, 2 deletionslib/WorkflowHic.groovy
- modules/local/cooler/balance.nf 1 addition, 1 deletionmodules/local/cooler/balance.nf
- modules/local/cooler/makebins.nf 3 additions, 3 deletionsmodules/local/cooler/makebins.nf
- modules/local/cooltools/eigs-cis.nf 4 additions, 4 deletionsmodules/local/cooltools/eigs-cis.nf
- modules/local/cooltools/insulation.nf 2 additions, 2 deletionsmodules/local/cooltools/insulation.nf
- modules/local/hicexplorer/hicFindTADs.nf 5 additions, 5 deletionsmodules/local/hicexplorer/hicFindTADs.nf
- modules/local/hicexplorer/hicPlotDistVsCounts.nf 1 addition, 1 deletionmodules/local/hicexplorer/hicPlotDistVsCounts.nf
- modules/local/hicpro/bowtie2_merge.nf 9 additions, 9 deletionsmodules/local/hicpro/bowtie2_merge.nf
- modules/local/hicpro/combine_mates.nf 4 additions, 4 deletionsmodules/local/hicpro/combine_mates.nf
- modules/local/hicpro/dnase_mapping_stats.nf 1 addition, 1 deletionmodules/local/hicpro/dnase_mapping_stats.nf
- modules/local/hicpro/get_restriction_fragments.nf 4 additions, 4 deletionsmodules/local/hicpro/get_restriction_fragments.nf
- modules/local/hicpro/get_valid_interaction.nf 8 additions, 8 deletionsmodules/local/hicpro/get_valid_interaction.nf
- modules/local/hicpro/get_valid_interaction_dnase.nf 7 additions, 7 deletionsmodules/local/hicpro/get_valid_interaction_dnase.nf
- modules/local/hicpro/hicpro2pairs.nf 1 addition, 1 deletionmodules/local/hicpro/hicpro2pairs.nf
- modules/local/hicpro/merge_stats.nf 4 additions, 4 deletionsmodules/local/hicpro/merge_stats.nf
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