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Verified Commit abdbc50e authored by Mia Croiset's avatar Mia Croiset
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add distance law and balanced matrices

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......@@ -51,6 +51,11 @@ Normal vs iterative | Normal vs parasplit | Normal vs cutsite
The iterative alignment gives more reads in general but less around the diagonal, in opposite with cutsite and parasplit which give more contacts, especially around the diagonal.
#### Chromosome 3 1kb, balanced:
Normal vs iterative | Normal vs parasplit | Normal vs cutsite
:-------------------------:|:-------------------------:|:-------------------------:
![](images/chr3_17_balanced.png) | ![](images/chr3_24_balanced.png) | ![](images/chr3_28_balanced.png)
#### Parasplit vs cutsite
All chromosomes (4kb, norm to 1) | Chromosome 3 (1kb, norm to 1) | Chromosome 3 (1kb, not normalized)
:-------------------------:|:------------------------:|:------------------------:
......@@ -60,6 +65,9 @@ When we look in detail the difference between parasplit and cutsite, we observed
For the alignment, we seem to get more contact with parasplit.
#### Distance law (4kb)
![](images/counts_4kb.png)
## Comparison of filtering options
......
docs/images/chr3_17_balanced.png

153 KiB

docs/images/chr3_24_balanced.png

154 KiB

docs/images/chr3_28_balanced.png

152 KiB

docs/images/counts_4kb.png

30.8 KiB

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