Skip to content
Snippets Groups Projects
Verified Commit abdbc50e authored by Mia Croiset's avatar Mia Croiset
Browse files

add distance law and balanced matrices

parent 89805c69
No related branches found
No related tags found
No related merge requests found
...@@ -51,6 +51,11 @@ Normal vs iterative | Normal vs parasplit | Normal vs cutsite ...@@ -51,6 +51,11 @@ Normal vs iterative | Normal vs parasplit | Normal vs cutsite
The iterative alignment gives more reads in general but less around the diagonal, in opposite with cutsite and parasplit which give more contacts, especially around the diagonal. The iterative alignment gives more reads in general but less around the diagonal, in opposite with cutsite and parasplit which give more contacts, especially around the diagonal.
#### Chromosome 3 1kb, balanced:
Normal vs iterative | Normal vs parasplit | Normal vs cutsite
:-------------------------:|:-------------------------:|:-------------------------:
![](images/chr3_17_balanced.png) | ![](images/chr3_24_balanced.png) | ![](images/chr3_28_balanced.png)
#### Parasplit vs cutsite #### Parasplit vs cutsite
All chromosomes (4kb, norm to 1) | Chromosome 3 (1kb, norm to 1) | Chromosome 3 (1kb, not normalized) All chromosomes (4kb, norm to 1) | Chromosome 3 (1kb, norm to 1) | Chromosome 3 (1kb, not normalized)
:-------------------------:|:------------------------:|:------------------------: :-------------------------:|:------------------------:|:------------------------:
...@@ -60,6 +65,9 @@ When we look in detail the difference between parasplit and cutsite, we observed ...@@ -60,6 +65,9 @@ When we look in detail the difference between parasplit and cutsite, we observed
For the alignment, we seem to get more contact with parasplit. For the alignment, we seem to get more contact with parasplit.
#### Distance law (4kb)
![](images/counts_4kb.png)
## Comparison of filtering options ## Comparison of filtering options
......
docs/images/chr3_17_balanced.png

153 KiB

docs/images/chr3_24_balanced.png

154 KiB

docs/images/chr3_28_balanced.png

152 KiB

docs/images/counts_4kb.png

30.8 KiB

0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment