diff --git a/docs/benchmark.md b/docs/benchmark.md index 09e4fe80037f24d97da626f81596de55cbe49997..e738248de124d1d5a5f52861edcfdfab17e6427e 100644 --- a/docs/benchmark.md +++ b/docs/benchmark.md @@ -51,6 +51,11 @@ Normal vs iterative | Normal vs parasplit | Normal vs cutsite The iterative alignment gives more reads in general but less around the diagonal, in opposite with cutsite and parasplit which give more contacts, especially around the diagonal. +#### Chromosome 3 1kb, balanced: +Normal vs iterative | Normal vs parasplit | Normal vs cutsite +:-------------------------:|:-------------------------:|:-------------------------: + |  |  + #### Parasplit vs cutsite All chromosomes (4kb, norm to 1) | Chromosome 3 (1kb, norm to 1) | Chromosome 3 (1kb, not normalized) :-------------------------:|:------------------------:|:------------------------: @@ -60,6 +65,9 @@ When we look in detail the difference between parasplit and cutsite, we observed For the alignment, we seem to get more contact with parasplit. +#### Distance law (4kb) + + ## Comparison of filtering options diff --git a/docs/images/chr3_17_balanced.png b/docs/images/chr3_17_balanced.png new file mode 100644 index 0000000000000000000000000000000000000000..ffde28a2405bfa41c9dfa7f9b7c20ec437bd4448 Binary files /dev/null and b/docs/images/chr3_17_balanced.png differ diff --git a/docs/images/chr3_24_balanced.png b/docs/images/chr3_24_balanced.png new file mode 100644 index 0000000000000000000000000000000000000000..a64a2bc788afc989814b6084369edc911227fd0e Binary files /dev/null and b/docs/images/chr3_24_balanced.png differ diff --git a/docs/images/chr3_28_balanced.png b/docs/images/chr3_28_balanced.png new file mode 100644 index 0000000000000000000000000000000000000000..8f2c7323c6747864e42be34cda6d6419c5e559ce Binary files /dev/null and b/docs/images/chr3_28_balanced.png differ diff --git a/docs/images/counts_4kb.png b/docs/images/counts_4kb.png new file mode 100644 index 0000000000000000000000000000000000000000..e98c06513b79cc605bbcb6d84edf1a074bdc3232 Binary files /dev/null and b/docs/images/counts_4kb.png differ