Commits · 0d3f5da910f21eed49035d5812837ebe661fbd70 · LBMC / Delattre / kmer diff

Sep 11, 2023
- main.nf: add sample_reads modules · 0d3f5da9
  Laurent Modolo authored 1 year ago
  
  0d3f5da9
Aug 30, 2023
- block clustering · 811745ca
  Laurent Modolo authored 1 year ago
  
  811745ca
Aug 05, 2023
- add clustering analysis in addition to boostrap analaysis · 66644725
  Laurent Modolo authored 1 year ago
  
  66644725
Jul 21, 2023
- remove some publisDir · a494a7fb
  Laurent Modolo authored 1 year ago
  
  a494a7fb
Jun 09, 2023
- kmerclust.nf: reduce cpu · fdfd84da
  Laurent Modolo authored 1 year ago
  
  fdfd84da
- split kmerclust into multiple processes · 765b7e36
  Laurent Modolo authored 1 year ago
  
  765b7e36
- split plot from the analysis · 086a8767
  Laurent Modolo authored 1 year ago
  
  086a8767
Jun 08, 2023
- update kmerclust version · 065bb98a
  Laurent Modolo authored 1 year ago
  
  065bb98a
- pass params.csv as a channel to kmerclust · 5f1c445f
  Laurent Modolo authored 1 year ago
  
  5f1c445f
- add projectDir for kmerclust · 00d80ce7
  Laurent Modolo authored 1 year ago
  
  00d80ce7
- mergekmer.nf: fix typo · 30c57a00
  Laurent Modolo authored 1 year ago
  
  30c57a00
- update mergekmer.nf output to match input of kmerclust · f5bd9063
  Laurent Modolo authored 1 year ago
  
  f5bd9063
Jun 07, 2023
- add cpu args to kmerclust · fba1fce0
  Laurent Modolo authored 1 year ago
  
  fba1fce0
- kmerclust: fix process name · 1a3ed11b
  Laurent Modolo authored 1 year ago
  
  1a3ed11b
- add kmerclust module to main.nf · ed018a7e
  Laurent Modolo authored 1 year ago
  
  ed018a7e
- add kmerclust module · 1efc9788
  Laurent Modolo authored 1 year ago
  
  1efc9788
May 23, 2023
- mergekmer.nf: add kmersize in the results path · 7bd66572
  Laurent Modolo authored 2 years ago
  
  7bd66572
- change collate step to collate by species · b67793d5
  Laurent Modolo authored 2 years ago
  
  b67793d5
May 16, 2023
- update mergekmer to v0.1.2 · e2be1c8b
  Laurent Modolo authored 2 years ago
  
  e2be1c8b
- change output name for mergekmer collate · 8b57acd8
  Laurent Modolo authored 2 years ago
  
  8b57acd8
May 10, 2023
- mergekmer.nf: fix id · 13429532
  Laurent Modolo authored 2 years ago
  
  13429532
- rename output for collatekmer · 9ed79433
  Laurent Modolo authored 2 years ago
  
  9ed79433
- split COLLATEKMER in 2 steps · 0a3203a1
  Laurent Modolo authored 2 years ago
  
  0a3203a1
Apr 28, 2023
- fix collatekmer · a7d66307
  Laurent Modolo authored 2 years ago
  
  a7d66307
- add kmersize parameter · f9892e16
  Laurent Modolo authored 2 years ago
  
  f9892e16
Apr 27, 2023
- add collatekmer step · 2c070852
  Laurent Modolo authored 2 years ago
  
  2c070852
Apr 26, 2023
- add mergekmer module · 11ae71a4
  Laurent Modolo authored 2 years ago
  
  11ae71a4
Apr 21, 2023
- fix version output for split · b880a038
  Laurent Modolo authored 2 years ago
  
  b880a038
Apr 20, 2023
- split.nf: use lbmc/alpine:3.17 · 56985913
  Laurent Modolo authored 2 years ago
  
  56985913
- add split process · 93338e8d
  Laurent Modolo authored 2 years ago
  
  93338e8d
Apr 19, 2023
- kmc.nf: fix typo · 0cd35a4b
  Laurent Modolo authored 2 years ago
  
  0cd35a4b
- kmc.nf: rename process · e50a3f22
  Laurent Modolo authored 2 years ago
  
  e50a3f22
Apr 18, 2023
- kmc.nf: change version output · 995cf8c1
  Laurent Modolo authored 2 years ago
  
  995cf8c1
- add kmc module · a8f12adc
  Laurent Modolo authored 2 years ago
  
  a8f12adc
Mar 29, 2023
- update config · 3856bdcf
  Laurent Modolo authored 2 years ago
  
  3856bdcf
- add nextflow pipeline for fastkmers · 5f215dd4
  Laurent Modolo authored 2 years ago
  
  5f215dd4