Skip to content
Snippets Groups Projects
Commit e83abf7a authored by Xavier Grand's avatar Xavier Grand
Browse files

minor modif porechop/main.nf --input ../

parent 614ced31
No related branches found
No related tags found
No related merge requests found
...@@ -19,6 +19,6 @@ process porechop { ...@@ -19,6 +19,6 @@ process porechop {
""" """
mkdir ${barcode} mkdir ${barcode}
cd ${barcode}/ cd ${barcode}/
porechop --input \$(readlink -f ../${fastq}) -o ${barcode}_merged_porechoped.fastq.gz --threads ${task.cpus} porechop --input ../${fastq} -o ${barcode}_merged_porechoped.fastq.gz --threads ${task.cpus}
""" """
} }
\ No newline at end of file
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment