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Commit 6f656faa authored by aliarifki's avatar aliarifki
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basecall_fast5_gpu.out.sequencing_summary à la place de ss pour le CQ bam

parent 54a3e1bc
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......@@ -275,15 +275,7 @@ workflow {
hbv_genome(cut_5pRACE.out.fastq_cutadapt, genome.collect())
sort_index_bam(hbv_genome.out.bam)
control_bam(ss.collect(), sort_index_bam.out.indexed_bam)
sort_index_bam.out.indexed_bam
.flatten()
.filter(~/.*bam$/)
.collect()
.set{bam_path}
//control_bam(ss, bam_path)
control_bam(basecall_fast5_gpu.out.sequencing_summary.collect(), sort_index_bam.out.indexed_bam)
//###################### START POSITIONS #######################
......
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