diff --git a/src/bolero.nf b/src/bolero.nf index 2f3e4131776af14196c9278a0764a13547350a02..cc7cc1d64c5b92767940ce91d2701adc11b8f648 100755 --- a/src/bolero.nf +++ b/src/bolero.nf @@ -275,15 +275,7 @@ workflow { hbv_genome(cut_5pRACE.out.fastq_cutadapt, genome.collect()) sort_index_bam(hbv_genome.out.bam) - control_bam(ss.collect(), sort_index_bam.out.indexed_bam) - - sort_index_bam.out.indexed_bam - .flatten() - .filter(~/.*bam$/) - .collect() - .set{bam_path} - - //control_bam(ss, bam_path) + control_bam(basecall_fast5_gpu.out.sequencing_summary.collect(), sort_index_bam.out.indexed_bam) //###################### START POSITIONS #######################