From 6f656faa7815cbd28b65b00525323583ce78a945 Mon Sep 17 00:00:00 2001
From: aliarifki <aliarifki@outlook.fr>
Date: Tue, 4 Jul 2023 09:55:05 +0200
Subject: [PATCH] =?UTF-8?q?basecall=5Ffast5=5Fgpu.out.sequencing=5Fsummary?=
=?UTF-8?q?=20=C3=A0=20la=20place=20de=20ss=20pour=20le=20CQ=20bam?=
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---
src/bolero.nf | 10 +---------
1 file changed, 1 insertion(+), 9 deletions(-)
diff --git a/src/bolero.nf b/src/bolero.nf
index 2f3e413..cc7cc1d 100755
--- a/src/bolero.nf
+++ b/src/bolero.nf
@@ -275,15 +275,7 @@ workflow {
hbv_genome(cut_5pRACE.out.fastq_cutadapt, genome.collect())
sort_index_bam(hbv_genome.out.bam)
- control_bam(ss.collect(), sort_index_bam.out.indexed_bam)
-
- sort_index_bam.out.indexed_bam
- .flatten()
- .filter(~/.*bam$/)
- .collect()
- .set{bam_path}
-
- //control_bam(ss, bam_path)
+ control_bam(basecall_fast5_gpu.out.sequencing_summary.collect(), sort_index_bam.out.indexed_bam)
//###################### START POSITIONS #######################
--
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