Commits · acb3143cf711a50db6e14f96ec4d405f61fa619b · Xavier Grand / ChIPster · GitLab

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May 05, 2021
- alntools: double escape awk script · acb3143c
  Laurent Modolo authored 3 years ago
  
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  acb3143c
- nf_modules: update alntools awk · f2f617c5
  Laurent Modolo authored 3 years ago
  
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  f2f617c5
- alntools: update params names · d2c5476d
  Laurent Modolo authored 3 years ago
  
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  d2c5476d
- alntools: update transcript lengths computation · e54720be
  Laurent Modolo authored 3 years ago
  
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  e54720be
- alntools: fix docker version · f38f822f
  Laurent Modolo authored 3 years ago
  
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  f38f822f
- flexi_splitter: fix awk cmd · f089ea6b
  Laurent Modolo authored 3 years ago
  
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  f089ea6b
- kb: remove collect() call · ef62cf28
  Laurent Modolo authored 3 years ago
  
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  ef62cf28
- emase-zero: change gtf to bam cardinality to 1 to 1 · 7ccc789d
  Laurent Modolo authored 3 years ago
  
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  7ccc789d
May 03, 2021
- flexi_splitter: fix awk cmd · 1ef49919
  Laurent Modolo authored 3 years ago
  
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  1ef49919
- flexi_splitter: fix code duplication · 447d8399
  Laurent Modolo authored 3 years ago
  
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  447d8399
- flexi_splitter: reformat output file to avoid file name conflict · e5a500da
  Laurent Modolo authored 3 years ago
  
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  e5a500da
- bwa: fix index names in mapping · 86b3d5ab
  Laurent Modolo authored 3 years ago
  
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  86b3d5ab
Apr 29, 2021
- flexi_splitter: fix paired-end input :33 · 9bb0eb38
  Laurent Modolo authored 3 years ago
  
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  9bb0eb38
- flexi_splitter: try to fix bug · 329e2300
  Laurent Modolo authored 3 years ago
  
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  329e2300
- flexi_splitter: fix var name :33 · d00b6bbe
  Laurent Modolo authored 3 years ago
  
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  d00b6bbe
- flexi_splitter: remove unnessary lines · f21fa8c5
  Laurent Modolo authored 3 years ago
  
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  f21fa8c5
- bwa: update index name · 7b94a507
  Laurent Modolo authored 3 years ago
  
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  7b94a507
- kb: add -m option to control memory · 260389ed
  Laurent Modolo authored 3 years ago
  
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  260389ed
- bwa: fix index variable · 3cfd27b2
  Laurent Modolo authored 3 years ago
  
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  3cfd27b2
- alntools: escape awk $ · 7d92ce73
  Laurent Modolo authored 3 years ago
  
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  7d92ce73
- emaze-zero: fix 2nd typo :21... · c91b17fb
  Laurent Modolo authored 3 years ago
  
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  c91b17fb
- emase-zero: fix typo :21 · 5587bc1d
  Laurent Modolo authored 3 years ago
  
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  5587bc1d
- kb: fix params.count · 3c6a5e9f
  Laurent Modolo authored 3 years ago
  
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  3c6a5e9f
- emase-zero: fix channel cardiality · 7101af2c
  Laurent Modolo authored 3 years ago
  
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  7101af2c
- emaze-zero: integrate alntools into named workflow · e94feb6f
  Laurent Modolo authored 3 years ago
  
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  e94feb6f
- emase-zero: add count workflow · 3dcea22e
  Laurent Modolo authored 3 years ago
  
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  3dcea22e
- flexi_plitter: capture all output · 5e581ec3
  Laurent Modolo authored 3 years ago
  
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  5e581ec3
- kb: add tr2g conversion · 9b9b404a
  Laurent Modolo authored 3 years ago
  
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  9b9b404a
- alntools: add bam2ec process · 789f6926
  Laurent Modolo authored 3 years ago
  
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  789f6926
Apr 28, 2021
- flexi_splitter: add other example of yaml file · dceb30ce
  Laurent Modolo authored 3 years ago
  
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  dceb30ce
- flexi_splitter: add main.nf and yaml example · 18dd092a
  Laurent Modolo authored 3 years ago
  
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  18dd092a
Apr 27, 2021
- kb: first draft of main.nf · 2eb49117
  Laurent Modolo authored 3 years ago
  
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  2eb49117
- deeptools: update to v3.5.1 · c0b9fb20
  Laurent Modolo authored 3 years ago
  
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  c0b9fb20
- deeptools: update main.nf to v3.5.0 · 3507966d
  Laurent Modolo authored 3 years ago
  
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  3507966d
- nf_modules: minors fix in deeptools and samtools · c52ab0e7
  Laurent Modolo authored 3 years ago
  
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  c52ab0e7
Apr 26, 2021
- deeptools: update process params · 48d80111
  Laurent Modolo authored 3 years ago
  
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  48d80111
- samtools: fix split_bam @ option · 1f25c4c5
  Laurent Modolo authored 3 years ago
  
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  1f25c4c5
- kallisto: fix singleend reads table · 8fc16bd7
  Laurent Modolo authored 3 years ago
  
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  8fc16bd7
Apr 21, 2021
- gatk4: match gatk3 params.* · 86cd76b3
  Laurent Modolo authored 3 years ago
  
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  86cd76b3
Apr 19, 2021
- multiqc: set QC as default out folder · 149a3eab
  Laurent Modolo authored 3 years ago
  
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  149a3eab