kallisto: fix singleend reads table

src/.docker_modules/kb/0.26.0/Dockerfile

+FROM python:3.9-slim 
+
+ENV KB_VERSION="0.26.0"
+
+RUN pip3 install kb-python==${KB_VERSION}
+
+CMD [ "bash" ]

src/.docker_modules/kb/0.26.0/docker_init.sh

+#!/bin/sh
+docker pull lbmc/kb:0.26.0
+docker build src/.docker_modules/kb/0.26.0 -t 'lbmc/kb:0.26.0'
+docker push lbmc/kb:0.26.0

src/nf_modules/kallisto/main.nf

@@ -62,6 +62,6 @@ process mapping_fastq {
   mkdir ${file_prefix}
   kallisto quant -i ${index} -t ${task.cpus} --single \
   ${params.mapping_fastq} -o ${file_prefix} \
-  ${reads} &> ${file_prefix}_kallisto_mapping_report.txt
+  ${reads[0]} &> ${file_prefix}_kallisto_mapping_report.txt
   """
 }