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Verified Commit 447d8399 authored by Laurent Modolo's avatar Laurent Modolo
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flexi_splitter: fix code duplication

parent e5a500da
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......@@ -47,10 +47,6 @@ process split_file {
"""
flexi_splitter ${params.split} -n 2 -f ${reads[0]},${reads[1]} -o split -c ${config}
rm -Rf split/unassigned
find split -type "f" | \
sed -E "s|(.*/split/(.*)/(.*))|\1 \2_\3|g" |
awk '{"mv "\$1" "\$2"}'
rm -Rf split
mkdir -p results/
find split -type "f" | \
sed -E "s|(.*/split/(.*)/(.*))|\1 \2_\3|g" |
......
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