From 447d8399946fcaa1b9f58c4ac2fcf88a57748a44 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 3 May 2021 11:28:05 +0200
Subject: [PATCH] flexi_splitter: fix code duplication
---
src/nf_modules/flexi_splitter/main.nf | 4 ----
1 file changed, 4 deletions(-)
diff --git a/src/nf_modules/flexi_splitter/main.nf b/src/nf_modules/flexi_splitter/main.nf
index c1b82af1..52e556cd 100644
--- a/src/nf_modules/flexi_splitter/main.nf
+++ b/src/nf_modules/flexi_splitter/main.nf
@@ -47,10 +47,6 @@ process split_file {
"""
flexi_splitter ${params.split} -n 2 -f ${reads[0]},${reads[1]} -o split -c ${config}
rm -Rf split/unassigned
- find split -type "f" | \
- sed -E "s|(.*/split/(.*)/(.*))|\1 \2_\3|g" |
- awk '{"mv "\$1" "\$2"}'
- rm -Rf split
mkdir -p results/
find split -type "f" | \
sed -E "s|(.*/split/(.*)/(.*))|\1 \2_\3|g" |
--
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