Commits · 92e0e00a6f2fce34af73d247ec44fc7e80e9f8d4 · Xavier Grand / ChIPster

Jun 02, 2021
- fix emit: for named workflow · 92e0e00a
  Laurent Modolo authored 3 years ago
  
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  92e0e00a
- bwa: add mapping workflow · 6f67c65c
  Laurent Modolo authored 3 years ago
  
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  6f67c65c
May 03, 2021
- bwa: fix index names in mapping · 86b3d5ab
  Laurent Modolo authored 3 years ago
  
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  86b3d5ab
Apr 29, 2021
- bwa: update index name · 7b94a507
  Laurent Modolo authored 3 years ago
  
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  7b94a507
- bwa: fix index variable · 3cfd27b2
  Laurent Modolo authored 3 years ago
  
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  3cfd27b2
Apr 16, 2021
- nf_modules: fix paired-single end handling · 481dc0d4
  Laurent Modolo authored 3 years ago
  
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  481dc0d4
Apr 15, 2021
- bwa: fix variable name :46 · bca33ec1
  Laurent Modolo authored 3 years ago
  
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  bca33ec1
- bwa: add missing { :52 · 41ae8c2e
  Laurent Modolo authored 3 years ago
  
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  41ae8c2e
- bwa: test if file_id is Map · c6be6b39
  Laurent Modolo authored 3 years ago
  
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  c6be6b39
- bwa: new change and library def · 34b4db9d
  Laurent Modolo authored 3 years ago
  
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  34b4db9d
- bwa: fix missing } :52 · fe818588
  Laurent Modolo authored 3 years ago
  
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  fe818588
- bwa: handle dict as file_id for mapping_fastq · 1de16f9a
  Laurent Modolo authored 3 years ago
  
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  1de16f9a
- bwa: change index and fastq order for mapping · e3de37bc
  Laurent Modolo authored 3 years ago
  
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  e3de37bc
- bwa: fix library variable definition · e13bd1eb
  Laurent Modolo authored 3 years ago
  
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  e13bd1eb
- bwa: fix typo in index_fasta · edd36c5b
  Laurent Modolo authored 3 years ago
  
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  edd36c5b
Apr 14, 2021
- bwa: update to match CONTRIBUTING.md · c6dce992
  Laurent Modolo authored 3 years ago
  
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  c6dce992
Apr 08, 2021
- bwa: add params.bwa · ece57ce1
  Laurent Modolo authored 3 years ago
  
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  ece57ce1
Mar 12, 2021
- bwa: add single_end mapping · d0b4f082
  Laurent Modolo authored 4 years ago
  
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  d0b4f082
- bwa: fix file_id definition · 71eb3162
  Laurent Modolo authored 4 years ago
  
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  71eb3162
- bwa: fix bug :46 · 801d4f6a
  Laurent Modolo authored 4 years ago
  
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  801d4f6a
- bwa: fix previous commit · e801efee
  Laurent Modolo authored 4 years ago
  
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  e801efee
- bwa: conditional definition of the library tag · 70a181f4
  Laurent Modolo authored 4 years ago
  
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  70a181f4
- bwa: fix bam tag format · 0db3382c
  Laurent Modolo authored 4 years ago
  
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  0db3382c
Feb 25, 2021
- bwa: add quote surrounding -R option · 97953ba2
  Laurent Modolo authored 4 years ago
  
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  97953ba2
- bwa: fix bwa_mem_R call · ade97af3
  Laurent Modolo authored 4 years ago
  
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  ade97af3
- bwa: add params.bwa_mem_R variable · 449693e2
  Laurent Modolo authored 4 years ago
  
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  449693e2
Feb 22, 2021
- bwa: fix report name · b725862d
  Laurent Modolo authored 4 years ago
  
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  b725862d
Feb 20, 2021
- bwa: fix typo :42 · e7bfb733
  Laurent Modolo authored 4 years ago
  
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  e7bfb733
- bwa: fix typo :42 · c99e5a39
  Laurent Modolo authored 4 years ago
  
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  c99e5a39
- bwa: replace sambamba by sambools · 0e7adae3
  Laurent Modolo authored 4 years ago
  
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  0e7adae3
Feb 18, 2021
- bwa: fix typo :42 · b0cf08d6
  Laurent Modolo authored 4 years ago
  
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  b0cf08d6
Feb 15, 2021
- fix bwa indexing · 21f39466
  Laurent Modolo authored 4 years ago
  
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  21f39466
- update picard samtools and bwa for DSL2 · 7a17de40
  Laurent Modolo authored 4 years ago
  
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  7a17de40