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Verified Commit 97953ba2 authored by Laurent Modolo's avatar Laurent Modolo
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bwa: add quote surrounding -R option

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......@@ -38,7 +38,7 @@ process mapping_fastq {
script:
"""
bwa mem -t ${task.cpus} \
-R ${params.bwa_mem_R} \
-R '${params.bwa_mem_R}' \
${index_id} ${reads[0]} ${reads[1]} 2> \
${file_id}_bwa_report.txt | \
samtools view -@ ${task.cpus} -Sb - > ${file_id}.bam
......
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