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Verified Commit d41a1c90 authored by Laurent Modolo's avatar Laurent Modolo
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macs3: add mfold option

parent 4f37c0be
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...@@ -2,6 +2,7 @@ version = "3.0.0a6" ...@@ -2,6 +2,7 @@ version = "3.0.0a6"
container_url = "lbmc/macs3:${version}" container_url = "lbmc/macs3:${version}"
params.macs_gsize=3e9 params.macs_gsize=3e9
params.macs_mfold=[5, 50]
process peak_calling { process peak_calling {
container = "${container_url}" container = "${container_url}"
...@@ -23,6 +24,7 @@ macs3 callpeak \ ...@@ -23,6 +24,7 @@ macs3 callpeak \
--call-summits \ --call-summits \
--control ${bam_control} \ --control ${bam_control} \
--keep-dup all \ --keep-dup all \
--mfold params.macs_mfold[0] params.macs_mfold[1]
--name ${bam_ip.simpleName} \ --name ${bam_ip.simpleName} \
--gsize ${params.macs_gsize} 2> \ --gsize ${params.macs_gsize} 2> \
${bam_ip.simpleName}_macs3_report.txt ${bam_ip.simpleName}_macs3_report.txt
...@@ -58,6 +60,7 @@ macs3 callpeak \ ...@@ -58,6 +60,7 @@ macs3 callpeak \
--call-summits \ --call-summits \
--control ${bg_control.simpleName}.bed \ --control ${bg_control.simpleName}.bed \
--keep-dup all \ --keep-dup all \
--mfold params.macs_mfold[0] params.macs_mfold[1]
--name ${bg_ip.simpleName} \ --name ${bg_ip.simpleName} \
--gsize ${params.macs_gsize} 2> \ --gsize ${params.macs_gsize} 2> \
${bg_ip.simpleName}_macs3_report.txt ${bg_ip.simpleName}_macs3_report.txt
......
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