From d41a1c904f4afb7b73a279e907e68c150aed50f5 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 18 Feb 2021 11:45:14 +0100
Subject: [PATCH] macs3: add mfold option
---
src/nf_modules/macs3/main.nf | 3 +++
1 file changed, 3 insertions(+)
diff --git a/src/nf_modules/macs3/main.nf b/src/nf_modules/macs3/main.nf
index 10060657..c36140aa 100644
--- a/src/nf_modules/macs3/main.nf
+++ b/src/nf_modules/macs3/main.nf
@@ -2,6 +2,7 @@ version = "3.0.0a6"
container_url = "lbmc/macs3:${version}"
params.macs_gsize=3e9
+params.macs_mfold=[5, 50]
process peak_calling {
container = "${container_url}"
@@ -23,6 +24,7 @@ macs3 callpeak \
--call-summits \
--control ${bam_control} \
--keep-dup all \
+ --mfold params.macs_mfold[0] params.macs_mfold[1]
--name ${bam_ip.simpleName} \
--gsize ${params.macs_gsize} 2> \
${bam_ip.simpleName}_macs3_report.txt
@@ -58,6 +60,7 @@ macs3 callpeak \
--call-summits \
--control ${bg_control.simpleName}.bed \
--keep-dup all \
+ --mfold params.macs_mfold[0] params.macs_mfold[1]
--name ${bg_ip.simpleName} \
--gsize ${params.macs_gsize} 2> \
${bg_ip.simpleName}_macs3_report.txt
--
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