diff --git a/src/nf_modules/macs3/main.nf b/src/nf_modules/macs3/main.nf index 1006065736d9544d63f7df98d89c30d61656a112..c36140aa236ad220213d8bc61ad726dcda170145 100644 --- a/src/nf_modules/macs3/main.nf +++ b/src/nf_modules/macs3/main.nf @@ -2,6 +2,7 @@ version = "3.0.0a6" container_url = "lbmc/macs3:${version}" params.macs_gsize=3e9 +params.macs_mfold=[5, 50] process peak_calling { container = "${container_url}" @@ -23,6 +24,7 @@ macs3 callpeak \ --call-summits \ --control ${bam_control} \ --keep-dup all \ + --mfold params.macs_mfold[0] params.macs_mfold[1] --name ${bam_ip.simpleName} \ --gsize ${params.macs_gsize} 2> \ ${bam_ip.simpleName}_macs3_report.txt @@ -58,6 +60,7 @@ macs3 callpeak \ --call-summits \ --control ${bg_control.simpleName}.bed \ --keep-dup all \ + --mfold params.macs_mfold[0] params.macs_mfold[1] --name ${bg_ip.simpleName} \ --gsize ${params.macs_gsize} 2> \ ${bg_ip.simpleName}_macs3_report.txt