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Verified Commit b2d7e719 authored by Laurent Modolo's avatar Laurent Modolo
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nextflow.pbs: change dag from pdf to html

parent 787e9c42
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...@@ -32,7 +32,7 @@ DATA=${SCRATCH}/${PROJECT}/data ...@@ -32,7 +32,7 @@ DATA=${SCRATCH}/${PROJECT}/data
NF_OPTIONS="-w \"${SCRATCH}/${PROJECT}/work/\" \ NF_OPTIONS="-w \"${SCRATCH}/${PROJECT}/work/\" \
-with-report \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_report.html\" \ -with-report \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_report.html\" \
-with-timeline \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_timeline.html\" \ -with-timeline \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_timeline.html\" \
-with-dag \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_dag.pdf\"" -with-dag \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_dag.html\""
${NEXTFLOW} ${NF} -c ${CONFIG} -profile ccin2p3 ${NF_OPTIONS} \ ${NEXTFLOW} ${NF} -c ${CONFIG} -profile ccin2p3 ${NF_OPTIONS} \
--fasta "${DATA}/fasta" \ --fasta "${DATA}/fasta" \
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