From b2d7e7196850909e1ce43718a97767c13fa08c08 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 4 Jun 2019 10:03:17 +0200
Subject: [PATCH] nextflow.pbs: change dag from pdf to html
---
src/nextflow.pbs | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nextflow.pbs b/src/nextflow.pbs
index 4aaff8e7..e89d8599 100644
--- a/src/nextflow.pbs
+++ b/src/nextflow.pbs
@@ -32,7 +32,7 @@ DATA=${SCRATCH}/${PROJECT}/data
NF_OPTIONS="-w \"${SCRATCH}/${PROJECT}/work/\" \
-with-report \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_report.html\" \
-with-timeline \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_timeline.html\" \
--with-dag \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_dag.pdf\""
+-with-dag \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_dag.html\""
${NEXTFLOW} ${NF} -c ${CONFIG} -profile ccin2p3 ${NF_OPTIONS} \
--fasta "${DATA}/fasta" \
--
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