diff --git a/src/nextflow.pbs b/src/nextflow.pbs index 4aaff8e79e6f4833004be227f4cb082ddedf3050..e89d8599f10aeac03270e3b1b26d9a376edf7a15 100644 --- a/src/nextflow.pbs +++ b/src/nextflow.pbs @@ -32,7 +32,7 @@ DATA=${SCRATCH}/${PROJECT}/data NF_OPTIONS="-w \"${SCRATCH}/${PROJECT}/work/\" \ -with-report \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_report.html\" \ -with-timeline \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_timeline.html\" \ --with-dag \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_dag.pdf\"" +-with-dag \"${SCRATCH}/${PROJECT}/results/${PIPELINE}_dag.html\"" ${NEXTFLOW} ${NF} -c ${CONFIG} -profile ccin2p3 ${NF_OPTIONS} \ --fasta "${DATA}/fasta" \