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Verified Commit 9fb75825 authored by Laurent Modolo's avatar Laurent Modolo
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UrQt: add singularity tests

parent c8902c46
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./nextflow src/nf_modules/UrQt/trimming_paired.nf \
-c src/nf_modules/UrQt/trimming_paired.config \
-profile docker \
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \
-resume
./nextflow src/nf_modules/UrQt/trimming_single.nf \
-c src/nf_modules/UrQt/trimming_single.config \
-profile docker \
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \
-resume
if [ -x "$(command -v singularity)" ]; then
./nextflow src/nf_modules/UrQt/trimming_single.nf \
-c src/nf_modules/UrQt/trimming_single.config \
-profile singularity \
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \
-resume
./nextflow src/nf_modules/UrQt/trimming_single.nf \
-c src/nf_modules/UrQt/trimming_single.config \
-profile singularity \
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \
-resume
fi
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