From 9fb75825ed07ec22789e4d2b6b13080c7856b761 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 1 Mar 2019 15:17:09 +0100
Subject: [PATCH] UrQt: add singularity tests
---
src/nf_modules/UrQt/tests.sh | 12 ++++++++----
1 file changed, 8 insertions(+), 4 deletions(-)
diff --git a/src/nf_modules/UrQt/tests.sh b/src/nf_modules/UrQt/tests.sh
index 2c510d78..cc8e32f4 100755
--- a/src/nf_modules/UrQt/tests.sh
+++ b/src/nf_modules/UrQt/tests.sh
@@ -1,21 +1,25 @@
./nextflow src/nf_modules/UrQt/trimming_paired.nf \
-c src/nf_modules/UrQt/trimming_paired.config \
-profile docker \
- --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
+ --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \
+ -resume
./nextflow src/nf_modules/UrQt/trimming_single.nf \
-c src/nf_modules/UrQt/trimming_single.config \
-profile docker \
- --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
+ --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \
+ -resume
if [ -x "$(command -v singularity)" ]; then
./nextflow src/nf_modules/UrQt/trimming_single.nf \
-c src/nf_modules/UrQt/trimming_single.config \
-profile singularity \
- --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
+ --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \
+ -resume
./nextflow src/nf_modules/UrQt/trimming_single.nf \
-c src/nf_modules/UrQt/trimming_single.config \
-profile singularity \
- --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
+ --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \
+ -resume
fi
--
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