diff --git a/src/nf_modules/UrQt/tests.sh b/src/nf_modules/UrQt/tests.sh index 2c510d784204d1a2fe54452afa3f7e31dd18652b..cc8e32f4a5bf528dab305cc33e7524715ae9ca38 100755 --- a/src/nf_modules/UrQt/tests.sh +++ b/src/nf_modules/UrQt/tests.sh @@ -1,21 +1,25 @@ ./nextflow src/nf_modules/UrQt/trimming_paired.nf \ -c src/nf_modules/UrQt/trimming_paired.config \ -profile docker \ - --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" + --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \ + -resume ./nextflow src/nf_modules/UrQt/trimming_single.nf \ -c src/nf_modules/UrQt/trimming_single.config \ -profile docker \ - --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" + --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \ + -resume if [ -x "$(command -v singularity)" ]; then ./nextflow src/nf_modules/UrQt/trimming_single.nf \ -c src/nf_modules/UrQt/trimming_single.config \ -profile singularity \ - --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" + --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \ + -resume ./nextflow src/nf_modules/UrQt/trimming_single.nf \ -c src/nf_modules/UrQt/trimming_single.config \ -profile singularity \ - --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" + --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \ + -resume fi