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Unverified Commit 639c47ed authored by Laurent Modolo's avatar Laurent Modolo
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HTSeq: nf update psmn config

parent 221bd018
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......@@ -14,10 +14,22 @@ profiles {
psmn {
process{
withname: sort_bam {
beforeScript = "module purge; module load SAMtools/1.7"
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SAMtools/1.7"
executor = "sge"
cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
}
withname: trimming {
beforeScript = "module purge; module load HTSeq/0.8.0"
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "HTSeq/0.8.0"
executor = "sge"
cpus = 1
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
}
}
}
......
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