From 639c47ed98cf50f331d4a3a974ef6ecab0b4be87 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Tue, 23 Oct 2018 16:49:27 +0200
Subject: [PATCH] HTSeq: nf update psmn config
---
src/nf_modules/HTSeq/htseq.config | 16 ++++++++++++++--
1 file changed, 14 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/HTSeq/htseq.config b/src/nf_modules/HTSeq/htseq.config
index 42088dd7..8aa704c3 100644
--- a/src/nf_modules/HTSeq/htseq.config
+++ b/src/nf_modules/HTSeq/htseq.config
@@ -14,10 +14,22 @@ profiles {
psmn {
process{
withname: sort_bam {
- beforeScript = "module purge; module load SAMtools/1.7"
+ beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+ module = "SAMtools/1.7"
+ executor = "sge"
+ cpus = 1
+ memory = "20GB"
+ time = "12h"
+ queue = 'monointeldeb128'
}
withname: trimming {
- beforeScript = "module purge; module load HTSeq/0.8.0"
+ beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+ module = "HTSeq/0.8.0"
+ executor = "sge"
+ cpus = 1
+ memory = "20GB"
+ time = "12h"
+ queue = 'monointeldeb128'
}
}
}
--
GitLab