diff --git a/src/nf_modules/HTSeq/htseq.config b/src/nf_modules/HTSeq/htseq.config index 42088dd754164acc9065ea8b23c1ba2d5b07b85b..8aa704c38bc49596d11ab37fcb38ffbf80395647 100644 --- a/src/nf_modules/HTSeq/htseq.config +++ b/src/nf_modules/HTSeq/htseq.config @@ -14,10 +14,22 @@ profiles { psmn { process{ withname: sort_bam { - beforeScript = "module purge; module load SAMtools/1.7" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "SAMtools/1.7" + executor = "sge" + cpus = 1 + memory = "20GB" + time = "12h" + queue = 'monointeldeb128' } withname: trimming { - beforeScript = "module purge; module load HTSeq/0.8.0" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "HTSeq/0.8.0" + executor = "sge" + cpus = 1 + memory = "20GB" + time = "12h" + queue = 'monointeldeb128' } } }