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Verified Commit 32c4ad6c authored by Laurent Modolo's avatar Laurent Modolo
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kb: change --lamano option into --workflow lamano

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src/nf_modules/kb/main.nf
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...@@ -334,7 +334,7 @@ process velocity_default { ...@@ -334,7 +334,7 @@ process velocity_default {
-o ${file_prefix} \ -o ${file_prefix} \
-c1 ${cdna_t2g} \ -c1 ${cdna_t2g} \
-c2 ${intron_t2g} \ -c2 ${intron_t2g} \
--lamanno \ --workflow lamanno \
${whitelist_param} \ ${whitelist_param} \
-x 10XV3 \ -x 10XV3 \
${params.count} \ ${params.count} \
...@@ -389,7 +389,7 @@ process velocity_marseq { ...@@ -389,7 +389,7 @@ process velocity_marseq {
-o ${file_prefix} \ -o ${file_prefix} \
-c1 ${cdna_t2g} \ -c1 ${cdna_t2g} \
-c2 ${intron_t2g} \ -c2 ${intron_t2g} \
--lamanno \ --workflow lamanno \
${whitelist_param} \ ${whitelist_param} \
${params.count} \ ${params.count} \
-x 1,0,6:1,6,14:0,0,0 \ -x 1,0,6:1,6,14:0,0,0 \
...@@ -408,7 +408,7 @@ process velocity_marseq { ...@@ -408,7 +408,7 @@ process velocity_marseq {
-o ${file_prefix} \ -o ${file_prefix} \
-c1 ${cdna_t2g} \ -c1 ${cdna_t2g} \
-c2 ${intron_t2g} \ -c2 ${intron_t2g} \
--lamanno \ --workflow lamanno \
${whitelist_param} \ ${whitelist_param} \
${params.count} \ ${params.count} \
-x 1,0,6:1,6,14:0,0,0 \ -x 1,0,6:1,6,14:0,0,0 \
......
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