From 32c4ad6c58cf9cb4b3f57a87c0803075af35a88a Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 30 Jun 2021 12:00:51 +0200
Subject: [PATCH] kb: change --lamano option into   --workflow lamano

---
 src/nf_modules/kb/main.nf | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/src/nf_modules/kb/main.nf b/src/nf_modules/kb/main.nf
index 8254a591..0f3986c7 100644
--- a/src/nf_modules/kb/main.nf
+++ b/src/nf_modules/kb/main.nf
@@ -334,7 +334,7 @@ process velocity_default {
     -o ${file_prefix} \
     -c1 ${cdna_t2g} \
     -c2 ${intron_t2g} \
-    --lamanno \
+    --workflow lamanno \
     ${whitelist_param} \
     -x 10XV3 \
     ${params.count} \
@@ -389,7 +389,7 @@ process velocity_marseq {
     -o ${file_prefix} \
     -c1 ${cdna_t2g} \
     -c2 ${intron_t2g} \
-    --lamanno \
+    --workflow lamanno \
     ${whitelist_param} \
     ${params.count} \
     -x 1,0,6:1,6,14:0,0,0 \
@@ -408,7 +408,7 @@ process velocity_marseq {
     -o ${file_prefix} \
     -c1 ${cdna_t2g} \
     -c2 ${intron_t2g} \
-    --lamanno \
+    --workflow lamanno \
     ${whitelist_param} \
     ${params.count} \
     -x 1,0,6:1,6,14:0,0,0 \
-- 
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