From 32c4ad6c58cf9cb4b3f57a87c0803075af35a88a Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Wed, 30 Jun 2021 12:00:51 +0200 Subject: [PATCH] kb: change --lamano option into --workflow lamano --- src/nf_modules/kb/main.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/nf_modules/kb/main.nf b/src/nf_modules/kb/main.nf index 8254a591..0f3986c7 100644 --- a/src/nf_modules/kb/main.nf +++ b/src/nf_modules/kb/main.nf @@ -334,7 +334,7 @@ process velocity_default { -o ${file_prefix} \ -c1 ${cdna_t2g} \ -c2 ${intron_t2g} \ - --lamanno \ + --workflow lamanno \ ${whitelist_param} \ -x 10XV3 \ ${params.count} \ @@ -389,7 +389,7 @@ process velocity_marseq { -o ${file_prefix} \ -c1 ${cdna_t2g} \ -c2 ${intron_t2g} \ - --lamanno \ + --workflow lamanno \ ${whitelist_param} \ ${params.count} \ -x 1,0,6:1,6,14:0,0,0 \ @@ -408,7 +408,7 @@ process velocity_marseq { -o ${file_prefix} \ -c1 ${cdna_t2g} \ -c2 ${intron_t2g} \ - --lamanno \ + --workflow lamanno \ ${whitelist_param} \ ${params.count} \ -x 1,0,6:1,6,14:0,0,0 \ -- GitLab