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Verified Commit 2568b430 authored by Laurent Modolo's avatar Laurent Modolo
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kallisto_index.pbs: update pbs

parent 99dec62b
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......@@ -24,6 +24,6 @@ PIPELINE=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.nf
# change to your project / pipeline !
CONFIG=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.config
${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3 \
--fasta "${SCRATCH}/<project>/data/fasta" \
${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3_singularity \
--fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta \
-w "${SCRATCH}"
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