From 2568b430fb71b7da079dd12e9dfecc1890ef20cf Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 20 May 2019 13:52:13 +0200
Subject: [PATCH] kallisto_index.pbs: update pbs
---
src/kallisto_index.pbs | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/kallisto_index.pbs b/src/kallisto_index.pbs
index 9221dfcd..18647fe9 100644
--- a/src/kallisto_index.pbs
+++ b/src/kallisto_index.pbs
@@ -24,6 +24,6 @@ PIPELINE=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.nf
# change to your project / pipeline !
CONFIG=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.config
-${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3 \
---fasta "${SCRATCH}/<project>/data/fasta" \
+${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3_singularity \
+--fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta \
-w "${SCRATCH}"
--
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