diff --git a/src/kallisto_index.pbs b/src/kallisto_index.pbs index 9221dfcda064a7a35cecfbfe137412993097c1b1..18647fe9a497714ddfc276aa82304608709b73ac 100644 --- a/src/kallisto_index.pbs +++ b/src/kallisto_index.pbs @@ -24,6 +24,6 @@ PIPELINE=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.nf # change to your project / pipeline ! CONFIG=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.config -${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3 \ ---fasta "${SCRATCH}/<project>/data/fasta" \ +${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3_singularity \ +--fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta \ -w "${SCRATCH}"