Commits · master · vvanoost / nextflow

Aug 06, 2018
- correction local alignment minus CCA · 8dcbe9b1
  vvanoost authored 6 years ago
  
  8dcbe9b1
- confirg CCA_local · f6e1a5aa
  vvanoost authored 6 years ago
  
  f6e1a5aa
- CCA_local · 7e73ae00
  vvanoost authored 6 years ago
  
  7e73ae00
Aug 03, 2018
- bowtie 2 local · 6bc557f4
  vvanoost authored 6 years ago
  
  6bc557f4
- bowtie2 SE local · adcf08f2
  vvanoost authored 6 years ago
  
  adcf08f2
- changes to destination folders · 9f0502eb
  vvanoost authored 6 years ago
  
  9f0502eb
- CCA removal from mature tRNA nf · 30e9022a
  vvanoost authored 6 years ago
  
  30e9022a
- CCA removal from mature tRNA · 15bc6ba1
  vvanoost authored 6 years ago
  
  15bc6ba1
Aug 02, 2018
- add filtering step of reads based on mapping quality >=2 · 1814df72
  vvanoost authored 6 years ago
  
  1814df72
- add filtering step of reads based on mapping quality >=2 · 761517da
  vvanoost authored 6 years ago
  
  761517da
Aug 01, 2018
- final corrections to SE pipeline · b1dcaa1f
  vvanoost authored 6 years ago
  
  b1dcaa1f
- corrections to pipeline SE · 3fb6d6ea
  vvanoost authored 6 years ago
  
  3fb6d6ea
- correction to SE pipeline · 8511a757
  vvanoost authored 6 years ago
  
  8511a757
- config for pipeline SE · bd4f17a9
  vvanoost authored 6 years ago
  
  bd4f17a9
- pipeline for Single-end SE sequencing · e1ef7769
  vvanoost authored 6 years ago
  
  e1ef7769
Jul 31, 2018
- new pipeline_bowtie2_nosplit bam · 133a4f03
  vvanoost authored 6 years ago
  
  133a4f03
- new pipeline_bowtie2_nosplit bam · 1d9c4ba6
  vvanoost authored 6 years ago
  
  1d9c4ba6
- correction bowtie 2 · 9a8ff609
  vvanoost authored 6 years ago
  
  9a8ff609
- RNAseq_sen1D.nf: mapping process: update to last modification on · 5b48bae1
  Laurent Modolo authored 6 years ago
  
  upstream
  Verified
  
  5b48bae1
- Merge branch 'master' of gitlab_lbmc:vvanoost/nextflow · 79ab181c
  Laurent Modolo authored 6 years ago
  
  Verified
  
  79ab181c
- corrections bowtie 1 · b89a7981
  vvanoost authored 6 years ago
  
  b89a7981
- correction bowtie 1 · 3080e442
  vvanoost authored 6 years ago
  
  3080e442
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · ef71cb0b
  Laurent Modolo authored 6 years ago
  
  Verified
  
  ef71cb0b
- Bowtie: update Bowtie.nf to match test · 78bebd72
  Laurent Modolo authored 6 years ago
  
  Verified
  
  78bebd72
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · 59ce096b
  Laurent Modolo authored 6 years ago
  
  Verified
  
  59ce096b
- README.md: update upstream url · e98e98b6
  Laurent Modolo authored 6 years ago
  
  Verified
  
  e98e98b6
- Bowtie: fix single mapping and index parsing · cc81bec2
  Laurent Modolo authored 6 years ago
  
  Verified
  
  cc81bec2
- correction pipleline bowtie 1 · 24bb9a8c
  vvanoost authored 6 years ago
  
  24bb9a8c
- pipeline bowtie2_config · 4fd44a34
  vvanoost authored 6 years ago
  
  4fd44a34
- pipeline bowtie2 · bf2956d2
  vvanoost authored 6 years ago
  
  bf2956d2
- change to bowtie1 · 8a0dd906
  vvanoost authored 6 years ago
  
  8a0dd906
Jul 30, 2018
- Bowti2: modify index handle to better deal with weird file names · ff9f90af
  Laurent Modolo authored 6 years ago
  
  Verified
  
  ff9f90af
- Merge branch 'master' of gitlab_lbmc:vvanoost/nextflow · 6d8d8279
  vvanoost authored 6 years ago
  
  6d8d8279
- RNAseq_sen1D.nf: fix bowtie2 index problem · 22a3597f
  Laurent Modolo authored 6 years ago
  
  22a3597f
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · cfc1506f
  vvanoost authored 6 years ago
  
  cfc1506f
- Bowtie2: add perl dependency and fix single-end example · af1d5130
  Laurent Modolo authored 6 years ago
  
  Verified
  
  af1d5130
- corrections fichier config fastqc · b39575a3
  vvanoost authored 6 years ago
  
  b39575a3
- fix typo in nf files · 3d5118d9
  Laurent Modolo authored 6 years ago
  
  Verified
  
  3d5118d9
- correct MultiQC · 18c29d70
  vvanoost authored 6 years ago
  
  18c29d70
- add fastqc and multiqc to config · ed67f90c
  vvanoost authored 6 years ago
  
  ed67f90c