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Commit b89a7981 authored by vvanoost's avatar vvanoost
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corrections bowtie 1

parent 3080e442
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......@@ -28,10 +28,10 @@ profiles {
container = "urqt:d62c1f8"
}
$index_fasta {
container = "bowtie2:2.3.4.1"
container = "bowtie:1.2.2"
}
$mapping_fastq {
container = "bowtie2:2.3.4.1"
container = "bowtie:1.2.2"
}
$sort_bam_forward {
container = "samtools:1.7"
......@@ -136,10 +136,10 @@ profiles {
penv = 'openmp8'
}
$index_fasta {
beforeScript = "module purge; module load Bowtie2/2.3.4.1"
beforeScript = "module purge; module load Bowtie/1.2.2"
}
$mapping_fastq {
beforeScript = "module purge; module load SAMtools/1.7; module load Bowtie2/2.3.4.1"
beforeScript = "module purge; module load SAMtools/1.7; module load Bowtie/1.2.2"
}
$sort_bam_forward {
beforeScript = "module purge; module load SAMtools/1.7"
......
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