From b89a7981ed916935a0f3a6782b0b4487daa644e9 Mon Sep 17 00:00:00 2001
From: vvanoost <vincent.vanoosthuyse@ens-lyon.fr>
Date: Tue, 31 Jul 2018 11:01:26 +0200
Subject: [PATCH] corrections bowtie 1
---
src/RNAseq_sen1D.config | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/src/RNAseq_sen1D.config b/src/RNAseq_sen1D.config
index 8d9967f..556c57c 100644
--- a/src/RNAseq_sen1D.config
+++ b/src/RNAseq_sen1D.config
@@ -28,10 +28,10 @@ profiles {
container = "urqt:d62c1f8"
}
$index_fasta {
- container = "bowtie2:2.3.4.1"
+ container = "bowtie:1.2.2"
}
$mapping_fastq {
- container = "bowtie2:2.3.4.1"
+ container = "bowtie:1.2.2"
}
$sort_bam_forward {
container = "samtools:1.7"
@@ -136,10 +136,10 @@ profiles {
penv = 'openmp8'
}
$index_fasta {
- beforeScript = "module purge; module load Bowtie2/2.3.4.1"
+ beforeScript = "module purge; module load Bowtie/1.2.2"
}
$mapping_fastq {
- beforeScript = "module purge; module load SAMtools/1.7; module load Bowtie2/2.3.4.1"
+ beforeScript = "module purge; module load SAMtools/1.7; module load Bowtie/1.2.2"
}
$sort_bam_forward {
beforeScript = "module purge; module load SAMtools/1.7"
--
GitLab