Commits · b1dcaa1f21ef9ffd46288fdbdc6594a6287f6d58 · vvanoost / nextflow

Aug 01, 2018
- final corrections to SE pipeline · b1dcaa1f
  vvanoost authored 6 years ago
  
  b1dcaa1f
- corrections to pipeline SE · 3fb6d6ea
  vvanoost authored 6 years ago
  
  3fb6d6ea
- correction to SE pipeline · 8511a757
  vvanoost authored 6 years ago
  
  8511a757
- config for pipeline SE · bd4f17a9
  vvanoost authored 6 years ago
  
  bd4f17a9
- pipeline for Single-end SE sequencing · e1ef7769
  vvanoost authored 6 years ago
  
  e1ef7769
Jul 31, 2018
- new pipeline_bowtie2_nosplit bam · 133a4f03
  vvanoost authored 6 years ago
  
  133a4f03
- new pipeline_bowtie2_nosplit bam · 1d9c4ba6
  vvanoost authored 6 years ago
  
  1d9c4ba6
- correction bowtie 2 · 9a8ff609
  vvanoost authored 6 years ago
  
  9a8ff609
- RNAseq_sen1D.nf: mapping process: update to last modification on · 5b48bae1
  Laurent Modolo authored 6 years ago
  
  upstream
  Verified
  
  5b48bae1
- Merge branch 'master' of gitlab_lbmc:vvanoost/nextflow · 79ab181c
  Laurent Modolo authored 6 years ago
  
  Verified
  
  79ab181c
- corrections bowtie 1 · b89a7981
  vvanoost authored 6 years ago
  
  b89a7981
- correction bowtie 1 · 3080e442
  vvanoost authored 6 years ago
  
  3080e442
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · ef71cb0b
  Laurent Modolo authored 6 years ago
  
  Verified
  
  ef71cb0b
- Bowtie: update Bowtie.nf to match test · 78bebd72
  Laurent Modolo authored 6 years ago
  
  Verified
  
  78bebd72
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · 59ce096b
  Laurent Modolo authored 6 years ago
  
  Verified
  
  59ce096b
- README.md: update upstream url · e98e98b6
  Laurent Modolo authored 6 years ago
  
  Verified
  
  e98e98b6
- Bowtie: fix single mapping and index parsing · cc81bec2
  Laurent Modolo authored 6 years ago
  
  Verified
  
  cc81bec2
- correction pipleline bowtie 1 · 24bb9a8c
  vvanoost authored 6 years ago
  
  24bb9a8c
- pipeline bowtie2_config · 4fd44a34
  vvanoost authored 6 years ago
  
  4fd44a34
- pipeline bowtie2 · bf2956d2
  vvanoost authored 6 years ago
  
  bf2956d2
- change to bowtie1 · 8a0dd906
  vvanoost authored 6 years ago
  
  8a0dd906
Jul 30, 2018
- Bowti2: modify index handle to better deal with weird file names · ff9f90af
  Laurent Modolo authored 6 years ago
  
  Verified
  
  ff9f90af
- Merge branch 'master' of gitlab_lbmc:vvanoost/nextflow · 6d8d8279
  vvanoost authored 6 years ago
  
  6d8d8279
- RNAseq_sen1D.nf: fix bowtie2 index problem · 22a3597f
  Laurent Modolo authored 6 years ago
  
  22a3597f
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · cfc1506f
  vvanoost authored 6 years ago
  
  cfc1506f
- Bowtie2: add perl dependency and fix single-end example · af1d5130
  Laurent Modolo authored 6 years ago
  
  Verified
  
  af1d5130
- corrections fichier config fastqc · b39575a3
  vvanoost authored 6 years ago
  
  b39575a3
- fix typo in nf files · 3d5118d9
  Laurent Modolo authored 6 years ago
  
  Verified
  
  3d5118d9
- correct MultiQC · 18c29d70
  vvanoost authored 6 years ago
  
  18c29d70
- add fastqc and multiqc to config · ed67f90c
  vvanoost authored 6 years ago
  
  ed67f90c
- add fastqc and multiqc · 18ea02b0
  vvanoost authored 6 years ago
  
  18ea02b0
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · 0bf36fcb
  vvanoost authored 6 years ago
  
  0bf36fcb
Jul 27, 2018
- picard: add sge modules · 4f6d0692
  Laurent Modolo authored 6 years ago
  
  Verified
  
  4f6d0692
- README.md: add picard to tool table · 7795efad
  Laurent Modolo authored 6 years ago
  
  Verified
  
  7795efad
- Picard/2.18.11: add Dockerfiles · 2bf54bd2
  Laurent Modolo authored 6 years ago
  
  Verified
  
  2bf54bd2
- README.md: update tools table for MACS2 · 8b218461
  Laurent Modolo authored 6 years ago
  
  Verified
  
  8b218461
- update sge_modules · ee478e18
  Laurent Modolo authored 6 years ago
  
  Verified
  
  ee478e18
- MACS2: add docker files · c6846aa4
  Laurent Modolo authored 6 years ago
  
  Verified
  
  c6846aa4
Jul 26, 2018
- README.md: add docker module for MUSIC · 24e11357
  Laurent Modolo authored 6 years ago
  
  Verified
  
  24e11357
- MUSIC: add docker files · 92d2d77e
  Laurent Modolo authored 6 years ago
  
  Verified
  
  92d2d77e