Merge branch 'master' of gitlab_lbmc:pipelines/nextflow
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- README.md 29 additions, 0 deletionsREADME.md
- src/docker_modules/Bowtie/1.2.2/Dockerfile 12 additions, 0 deletionssrc/docker_modules/Bowtie/1.2.2/Dockerfile
- src/docker_modules/Bowtie/1.2.2/docker_init.sh 2 additions, 0 deletionssrc/docker_modules/Bowtie/1.2.2/docker_init.sh
- src/docker_modules/FastQC/0.11.5/Dockerfile 2 additions, 1 deletionsrc/docker_modules/FastQC/0.11.5/Dockerfile
- src/docker_modules/MACS2/2.1.0/Dockerfile 20 additions, 0 deletionssrc/docker_modules/MACS2/2.1.0/Dockerfile
- src/docker_modules/MACS2/2.1.0/docker_init.sh 2 additions, 0 deletionssrc/docker_modules/MACS2/2.1.0/docker_init.sh
- src/docker_modules/MUSIC/6613c53/Dockerfile 23 additions, 0 deletionssrc/docker_modules/MUSIC/6613c53/Dockerfile
- src/docker_modules/MUSIC/6613c53/docker_init.sh 2 additions, 0 deletionssrc/docker_modules/MUSIC/6613c53/docker_init.sh
- src/docker_modules/MultiQC/1.0/Dockerfile 7 additions, 1 deletionsrc/docker_modules/MultiQC/1.0/Dockerfile
- src/docker_modules/picard/2.18.11/Dockerfile 19 additions, 0 deletionssrc/docker_modules/picard/2.18.11/Dockerfile
- src/docker_modules/picard/2.18.11/PicardCommandLine 15 additions, 0 deletionssrc/docker_modules/picard/2.18.11/PicardCommandLine
- src/docker_modules/picard/2.18.11/docker_init.sh 2 additions, 0 deletionssrc/docker_modules/picard/2.18.11/docker_init.sh
- src/nf_modules/Bowtie/bowtie.config 24 additions, 0 deletionssrc/nf_modules/Bowtie/bowtie.config
- src/nf_modules/Bowtie/bowtie.nf 140 additions, 0 deletionssrc/nf_modules/Bowtie/bowtie.nf
- src/nf_modules/Bowtie/tests/index.nf 30 additions, 0 deletionssrc/nf_modules/Bowtie/tests/index.nf
- src/nf_modules/Bowtie/tests/mapping_paired.nf 49 additions, 0 deletionssrc/nf_modules/Bowtie/tests/mapping_paired.nf
- src/nf_modules/Bowtie/tests/mapping_single.nf 44 additions, 0 deletionssrc/nf_modules/Bowtie/tests/mapping_single.nf
- src/nf_modules/Bowtie/tests/tests.sh 17 additions, 0 deletionssrc/nf_modules/Bowtie/tests/tests.sh
- src/nf_modules/Bowtie2/bowtie2.nf 20 additions, 6 deletionssrc/nf_modules/Bowtie2/bowtie2.nf
- src/nf_modules/Bowtie2/tests/mapping_paired.nf 11 additions, 4 deletionssrc/nf_modules/Bowtie2/tests/mapping_paired.nf
src/docker_modules/Bowtie/1.2.2/Dockerfile
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src/docker_modules/picard/2.18.11/Dockerfile
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src/nf_modules/Bowtie/tests/tests.sh
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