Commits · 676669189675806000c0ef373394f28bdd5c6e90 · vvanoost / nextflow

Jul 24, 2018
- Add Ban sorting from SAMtools · 67666918
  vvanoost authored 6 years ago
  
  67666918
Jul 23, 2018
- command to start pipeline · 7e0c13e2
  vvanoost authored 6 years ago
  
  7e0c13e2
- fix 4 at the beginning of process in .nf file · ed687455
  vvanoost authored 6 years ago
  
  ed687455
- fix mistake 4 at beginning of process · 3628d195
  vvanoost authored 6 years ago
  
  3628d195
- Bowtie 2 config · 6bf1544d
  vvanoost authored 6 years ago
  
  6bf1544d
- Add Bowtie 2 parameters to pipeline · 2e246cff
  vvanoost authored 6 years ago
  
  2e246cff
- change params.fastq for bowtie2 · 8523d5f0
  vvanoost authored 6 years ago
  
  8523d5f0
- change cut to cut4 in trimming process · 9a0dddaa
  vvanoost authored 6 years ago
  
  9a0dddaa
- fichier de configuration cutadapt · bb6bca14
  vvanoost authored 6 years ago
  
  bb6bca14
- amendments to cutadapt to remove adapters in 5' and 3' from R1 and R2 · 3eff3194
  vvanoost authored 6 years ago
  
  3eff3194
- rename RNAseq_sen1D · f03d26c6
  vvanoost authored 6 years ago
  
  f03d26c6
Jul 18, 2018
- Add urqt to RNAseq_sen1∆.nf · 4e063da0
  vvanoost authored 6 years ago
  
  4e063da0
- Update RNAseq sen1∆.nf · 440083b2
  vvanoost authored 6 years ago
  
  440083b2
- modify params.fastq to include the .gz format and modify the output to include... · ec41d5e0
  vvanoost authored 6 years ago
  
  modify params.fastq to include the .gz format and modify the output to include _001 and include the 5' adapter
  ec41d5e0
- change adapter sequences for Nextflex 3' adapter · 742e683a
  vvanoost authored 6 years ago
  
  742e683a
Jul 03, 2018
- HISAT2:2.0.0: add docker files · 686a58f8
  Laurent Modolo authored 6 years ago
  
  Verified
  
  686a58f8
Jun 27, 2018
- add process fastqdump · 52b510e4
  jganofsk authored 6 years ago
  
  52b510e4
Jun 20, 2018
- src/docker_modules/HISAT2/ : module Hisat2 added · 4a6cde0b
  your name authored 6 years ago
  
  4a6cde0b
- src/docker_modules/UrQt/d62c1f8/Dockerfile : correction of the file · 30e42975
  your name authored 6 years ago
  
  30e42975
Jun 18, 2018
- kallisto.config: update to the last kallisto version · 3d96bc33
  Laurent Modolo authored 6 years ago
  
  Verified
  
  3d96bc33
- Kallisto/0.44.0: add Dockerfile · e9a183e3
  Laurent Modolo authored 6 years ago
  
  Verified
  
  e9a183e3
- Kallisto/0.44.0 : add docker files · b9807a5c
  Laurent Modolo authored 6 years ago
  
  Verified
  
  b9807a5c
- update sge_modules · edeaacfe
  Laurent Modolo authored 6 years ago
  
  Verified
  
  edeaacfe
Jun 07, 2018
- paired.nf files : pass the pair_id information in output · 5236de95
  Laurent Modolo authored 6 years ago
  
  Verified
  
  5236de95
- bedtools.nf: fix fasta params · 39257434
  Laurent Modolo authored 6 years ago
  
  Verified
  
  39257434
Jun 06, 2018
- Rnaseq.config : config for mapping_fastq and index_fasta · daa8a701
  nfontrod authored 6 years ago
  
  daa8a701
- Rnaseq.nf : index_fasta and mapping_fasta · 9ec5b176
  nfontrod authored 6 years ago
  
  9ec5b176
- Rnaseq.config :config fasta_from_bed · 811bd6bf
  nfontrod authored 6 years ago
  
  811bd6bf
- Rnaseq.nf : adding process fasta_from_bed · 02f41b4f
  nfontrod authored 6 years ago
  
  02f41b4f
- Rnaseq.nf : correct trimming process · 6b3092bb
  nfontrod authored 6 years ago
  
  6b3092bb
- Rnaseq.config : addition of trimming config · 2992a141
  nfontrod authored 6 years ago
  
  2992a141
- Rnaseq.nf : add trimming process · 240b4d6d
  nfontrod authored 6 years ago
  
  240b4d6d
- Rnaseq.config : docker config for adaptor_removal process · b04822b5
  nfontrod authored 6 years ago
  
  b04822b5
- Rnaseq.nf : creating process adaptor_removal · ce348ae2
  nfontrod authored 6 years ago
  
  ce348ae2
- UrQt: Dockerfile fix git version · a2d065e4
  Laurent Modolo authored 6 years ago
  
  a2d065e4
- fasta_sampler.nt : output modification · 514305e3
  nfontrod authored 6 years ago
  
  514305e3
- fasta_sampler.nf : publish · 8cdb9175
  nfontrod authored 6 years ago
  
  8cdb9175
- fasta_sampler.nf : Chanel definition · 3f28a4a0
  nfontrod authored 6 years ago
  
  3f28a4a0
- fasta_sampler_TP1 : add process sample_fasta · 46210bc9
  nfontrod authored 6 years ago
  
  46210bc9
- add sge config for some modules · 3454e1e8
  Laurent Modolo authored 6 years ago
  
  Verified
  
  3454e1e8