src/docker_modules/HISAT2/ : module Hisat2 added

src/docker_modules/HISAT2/2.0.0/Dockerfile

+FROM ubuntu:18.04
+MAINTAINER Nicolas Fontrodona
+
+ENV HISAT2_VERSION=2.0.0
+ENV PACKAGES unzip=6.0* \
+   gcc=4:7.3.0* \
+   g++=4:7.3.0* \
+   make=4.1* \
+   curl=7.58.0* \
+   ca-certificates=20180409 
+
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends ${PACKAGES} && \
+    apt-get clean
+
+RUN curl -k -L http://ccb.jhu.edu/software/hisat2/downloads/hisat2-${HISAT2_VERSION}-beta-source.zip -o hisat2_linux-v${HISAT2_VERSION}.zip && \
+unzip hisat2_linux-v${HISAT2_VERSION}.zip && \
+cd hisat2-${HISAT2_VERSION}-beta && \
+make && \
+cp hisat2 /usr/bin && \
+cp hisat2-* /usr/bin && \
+rm -Rf hisat2-${HISAT2_VERSION}-beta 
+

src/docker_modules/HISAT2/2.0.0/docker_init.sh

+#!/bin/sh
+docker build src/docker_modules/HISAT2/2.0.0 -t 'hisat2:2.0.0'