Commits · 676669189675806000c0ef373394f28bdd5c6e90 · vvanoost / nextflow

Jul 24, 2018
- Add Ban sorting from SAMtools · 67666918
  vvanoost authored 6 years ago
  
  67666918
Jul 23, 2018
- command to start pipeline · 7e0c13e2
  vvanoost authored 6 years ago
  
  7e0c13e2
- fix 4 at the beginning of process in .nf file · ed687455
  vvanoost authored 6 years ago
  
  ed687455
- fix mistake 4 at beginning of process · 3628d195
  vvanoost authored 6 years ago
  
  3628d195
- Bowtie 2 config · 6bf1544d
  vvanoost authored 6 years ago
  
  6bf1544d
- Add Bowtie 2 parameters to pipeline · 2e246cff
  vvanoost authored 6 years ago
  
  2e246cff
- deletion fasta · 0df8c23a
  vvanoost authored 6 years ago
  
  0df8c23a
- change params.fastq for bowtie2 · 8523d5f0
  vvanoost authored 6 years ago
  
  8523d5f0
- change cut to cut4 in trimming process · 9a0dddaa
  vvanoost authored 6 years ago
  
  9a0dddaa
- reference genome; version used by T. Diot to analyze the 1st RNA-seq · c791976f
  vvanoost authored 6 years ago
  
  c791976f
- fichier de configuration cutadapt · bb6bca14
  vvanoost authored 6 years ago
  
  bb6bca14
- amendments to cutadapt to remove adapters in 5' and 3' from R1 and R2 · 3eff3194
  vvanoost authored 6 years ago
  
  3eff3194
- add ignore DS_Store · d1343e8b
  vvanoost authored 6 years ago
  
  d1343e8b
- rename RNAseq_sen1D · f03d26c6
  vvanoost authored 6 years ago
  
  f03d26c6
Jul 18, 2018
- Add urqt to RNAseq_sen1∆.nf · 4e063da0
  vvanoost authored 6 years ago
  
  4e063da0
- Update RNAseq sen1∆.nf · 440083b2
  vvanoost authored 6 years ago
  
  440083b2
- modify params.fastq to include the .gz format and modify the output to include... · ec41d5e0
  vvanoost authored 6 years ago
  
  modify params.fastq to include the .gz format and modify the output to include _001 and include the 5' adapter
  ec41d5e0
- change adapter sequences for Nextflex 3' adapter · 742e683a
  vvanoost authored 6 years ago
  
  742e683a
Jul 03, 2018
- Merge branch 'cigogne/nextflow-master' into dev · 1041a4af
  Laurent Modolo authored 6 years ago
  
  1041a4af
- HISAT2:2.0.0: add docker files · 686a58f8
  Laurent Modolo authored 6 years ago
  
  686a58f8
- Merge branch 'master' into 'dev' · 0d3ded33
  Laurent Modolo authored 6 years ago
  
  Master See merge request pipelines/nextflow!4
  0d3ded33
Jun 27, 2018
- add process fastqdump · 52b510e4
  jganofsk authored 6 years ago
  
  52b510e4
Jun 20, 2018
- src/docker_modules/HISAT2/ : module Hisat2 added · 4a6cde0b
  your name authored 6 years ago
  
  4a6cde0b
- src/docker_modules/UrQt/d62c1f8/Dockerfile : solve conflict · f945638e
  your name authored 6 years ago
  
  f945638e
- src/docker_modules/UrQt/d62c1f8/Dockerfile : correction of the file · 30e42975
  your name authored 6 years ago
  
  30e42975
- TP_computational_biologists.md: add git flow link · 75375e05
  Laurent Modolo authored 6 years ago
  
  75375e05
- TP_computational_biologists.md · 946942bd
  Laurent Modolo authored 6 years ago
  
  946942bd
Jun 19, 2018
- TP_computational_biologists.md: add merge instruction · 53680ef9
  Laurent Modolo authored 6 years ago
  
  53680ef9
- TP_computational_biologists.md: add .nf and .config section · 246784cb
  Laurent Modolo authored 6 years ago
  
  246784cb
- TP_computational_biologists.md: fix typo · fd1fb24b
  Laurent Modolo authored 6 years ago
  
  fd1fb24b
- TP_computational_biologists.md: add links for files · 6bb48b6e
  Laurent Modolo authored 6 years ago
  
  6bb48b6e
Jun 18, 2018
- TP_computational_biologists.md: add Docker and SGE section · 077944ba
  Laurent Modolo authored 6 years ago
  
  077944ba
- kallisto.config: update to the last kallisto version · 3d96bc33
  Laurent Modolo authored 6 years ago
  
  3d96bc33
- Kallisto/0.44.0: add Dockerfile · e9a183e3
  Laurent Modolo authored 6 years ago
  
  e9a183e3
- Kallisto/0.44.0 : add docker files · b9807a5c
  Laurent Modolo authored 6 years ago
  
  b9807a5c
- update sge_modules · edeaacfe
  Laurent Modolo authored 6 years ago
  
  edeaacfe
- doc/Makefile: add TP_computational_biologists · db7ff2e3
  Laurent Modolo authored 6 years ago
  
  db7ff2e3
Jun 07, 2018
- README.md : add infos on forking and syncing · 4b81bc8b
  Laurent Modolo authored 6 years ago
  
  4b81bc8b
- paired.nf files : pass the pair_id information in output · 5236de95
  Laurent Modolo authored 6 years ago
  
  5236de95
- bedtools.nf: fix fasta params · 39257434
  Laurent Modolo authored 6 years ago
  
  39257434