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Commit 1d102f5d authored by nlecouvr's avatar nlecouvr
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another one

parent fbf5c70d
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...@@ -19,6 +19,7 @@ params.help = false ...@@ -19,6 +19,7 @@ params.help = false
log.info "reads files : ${params.reads}" log.info "reads files : ${params.reads}"
log.info "genome file : ${params.genome}" log.info "genome file : ${params.genome}"
genome = file (params.genome)
/* /*
...@@ -39,7 +40,7 @@ channel ...@@ -39,7 +40,7 @@ channel
workflow { workflow {
fastp(reads) fastp(reads)
//mapping //mapping
index_fasta(params.genome) index_fasta(genome)
mapping_fastq(index_fasta.out.index.collect(), mapping_fastq(index_fasta.out.index.collect(),
reads) reads)
} }
......
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