diff --git a/src/Dam_ID_analysis.nf b/src/Dam_ID_analysis.nf index 947330bd829578032ffa2527c63d64df5ef6112a..2445fef5075367ffafeaeb6d12a6369725fbda03 100644 --- a/src/Dam_ID_analysis.nf +++ b/src/Dam_ID_analysis.nf @@ -19,6 +19,7 @@ params.help = false log.info "reads files : ${params.reads}" log.info "genome file : ${params.genome}" +genome = file (params.genome) /* @@ -39,7 +40,7 @@ channel workflow { fastp(reads) //mapping - index_fasta(params.genome) + index_fasta(genome) mapping_fastq(index_fasta.out.index.collect(), reads) }