From 1d102f5d58e7bd744e050a2593fc46a60ceacdcf Mon Sep 17 00:00:00 2001
From: Nathan Lecouvreur <nathan.lecouvreur@ens-lyon.fr>
Date: Fri, 21 Jan 2022 11:33:26 +0100
Subject: [PATCH] another one
---
src/Dam_ID_analysis.nf | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/src/Dam_ID_analysis.nf b/src/Dam_ID_analysis.nf
index 947330b..2445fef 100644
--- a/src/Dam_ID_analysis.nf
+++ b/src/Dam_ID_analysis.nf
@@ -19,6 +19,7 @@ params.help = false
log.info "reads files : ${params.reads}"
log.info "genome file : ${params.genome}"
+genome = file (params.genome)
/*
@@ -39,7 +40,7 @@ channel
workflow {
fastp(reads)
//mapping
- index_fasta(params.genome)
+ index_fasta(genome)
mapping_fastq(index_fasta.out.index.collect(),
reads)
}
--
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