Commits · cbd23ab657eb28ecb515824d97fadf5144eed196 · nfontrod / nextflow · GitLab

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Mar 01, 2019
- Bowtie2: add singularity to nf files · cbd23ab6
  Laurent Modolo authored 6 years ago
  
  Verified
  
  cbd23ab6
Dec 19, 2018
- nf_modules: fix withname -> withName in config files · 85a68216
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  85a68216
Oct 26, 2018
- nf modules config: remove cpus info · 03f44eef
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  03f44eef
Oct 24, 2018
- add clusterOption for psmn to all config files · e057e9a1
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  e057e9a1
Oct 23, 2018
- Bowtie2: nf update config for psmn · 2973fe82
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  2973fe82
- nf config file update nf syntax for process · 3e2c83f3
  Laurent Modolo authored 6 years ago
  
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  3e2c83f3
- nf config: rename sge to psmn · fa486dc6
  Laurent Modolo authored 6 years ago
  
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  fa486dc6
Aug 22, 2018
- Bowtie2: update nf structure · 7aafb53f
  Laurent Modolo authored 6 years ago
  
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  7aafb53f
Aug 02, 2018
- Bowtie2: modify single-end to have a file_id variable like for · 81a2d4bb
  Laurent Modolo authored 6 years ago
  
  paired-end
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  81a2d4bb
Jul 31, 2018
- Bowtie2: change toList to collect · 9af182a1
  Laurent Modolo authored 6 years ago
  
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  9af182a1
- Bowtie: fix single mapping and index parsing · cc81bec2
  Laurent Modolo authored 6 years ago
  
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  cc81bec2
Jul 30, 2018
- Bowti2: modify index handle to better deal with weird file names · ff9f90af
  Laurent Modolo authored 6 years ago
  
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  ff9f90af
- Bowtie2: add perl dependency and fix single-end example · af1d5130
  Laurent Modolo authored 6 years ago
  
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  af1d5130
Jul 26, 2018
- Bowtie2: fix bug on nf files · 654fe7ec
  Laurent Modolo authored 6 years ago
  
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  654fe7ec
- bowtie2.nf: improve root finding of index file name as asked by @elabaron · d0d8b68b
  Laurent Modolo authored 6 years ago
  
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  d0d8b68b
Jul 23, 2018
- Bowtie2/test.sh: fix nf path · 5c6080a9
  Laurent Modolo authored 6 years ago
  
  Verified
  
  5c6080a9
Jun 07, 2018
- paired.nf files : pass the pair_id information in output · 5236de95
  Laurent Modolo authored 6 years ago
  
  Verified
  
  5236de95
Jun 06, 2018
- mv test.sh file from docker_modules to nf_modules · 8aee48b9
  Laurent Modolo authored 6 years ago
  
  Verified
  
  8aee48b9
Jun 05, 2018
- mv nf files to nf_modules · 705226a9
  Laurent Modolo authored 6 years ago
  
  Verified
  
  705226a9
- mv nf_modules to docker_modules · f51bf1e4
  Laurent Modolo authored 6 years ago
  
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  f51bf1e4
- make tests.sh files executable · aac63da9
  Laurent Modolo authored 6 years ago
  
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  aac63da9
- change collect to toList in nf files and run tests with multiple fastq · f7f61d07
  Laurent Modolo authored 6 years ago
  
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  f7f61d07
Jun 04, 2018
- Bowtie2: config fix module name · 018f08c7
  Laurent Modolo authored 6 years ago
  
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  018f08c7
- Bowtie2: add nf files and tests · 786e69de
  Laurent Modolo authored 6 years ago
  
  Verified
  
  786e69de
- Bowtie2: add samtools to Dockerfile · f594ce88
  Laurent Modolo authored 6 years ago
  
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  f594ce88
May 25, 2018
- add dockerfile for Bowtie2:2.3.4.1 · e6a0253b
  Laurent Modolo authored 6 years ago
  
  Verified
  
  e6a0253b