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Verified Commit 66a21c8a authored by Laurent Modolo's avatar Laurent Modolo
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README.md: update session 1 & 2

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# R formation # R formation
## session 1 ## Session 1
Introduction to R and RStudio
- R introduction
- RStudio interface
- numerical operation
- data structure
- functions
- R packages
- Examples
## Session 2
Introduction to tidyverse
In this session we play-back the steps of the creation of an Exel table In this session we play-back the steps of the creation of an Exel table
- numerical variable creation - numerical variable creation
- numerical opperations - numerical operations
- string creatation - string creation
- variable concatenation and variable type: paste0, typeof - variable concatenation and variable type: paste0, typeof
- vector : lenght, head, summary - vector : lenght, head, summary
- data.frame : dim, ncol, nrow - data.frame : dim, ncol, nrow
...@@ -13,7 +24,7 @@ In this session we play-back the steps of the creation of an Exel table ...@@ -13,7 +24,7 @@ In this session we play-back the steps of the creation of an Exel table
- list - list
## session 2 ## session 2
In this session we extract the list of differentillay expressed genes from a In this session we extract the list of differentially expressed genes from a
DESeq2 .csv output. We then extract only the up-regulated and down-regulated DESeq2 .csv output. We then extract only the up-regulated and down-regulated
genes. genes.
...@@ -40,7 +51,7 @@ Conversion of a fasta file into a GTF file ...@@ -40,7 +51,7 @@ Conversion of a fasta file into a GTF file
## session n+1 ## session n+1
Converting a nucleotide sequence into a protein sequence Converting a nucleotide sequence into a protein sequence
- load condon to AA table - load codon to AA table
- build conversion function between codon and AA - build conversion function between codon and AA
- build conversion function for a sequence function - build conversion function for a sequence function
- use list as hashing table - use list as hashing table
......
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