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R_basis
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66a21c8a
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66a21c8a
authored
5 years ago
by
Laurent Modolo
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README.md: update session 1 & 2
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# R formation
## session 1
## Session 1
Introduction to R and RStudio
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R introduction
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RStudio interface
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numerical operation
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data structure
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functions
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R packages
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Examples
## Session 2
Introduction to tidyverse
In this session we play-back the steps of the creation of an Exel table
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numerical variable creation
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numerical op
p
erations
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string creat
at
ion
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numerical operations
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string creation
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variable concatenation and variable type: paste0, typeof
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vector : lenght, head, summary
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data.frame : dim, ncol, nrow
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@@ -13,7 +24,7 @@ In this session we play-back the steps of the creation of an Exel table
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list
## session 2
In this session we extract the list of differentill
a
y expressed genes from a
In this session we extract the list of differenti
a
lly expressed genes from a
DESeq2 .csv output. We then extract only the up-regulated and down-regulated
genes.
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...
@@ -40,7 +51,7 @@ Conversion of a fasta file into a GTF file
## session n+1
Converting a nucleotide sequence into a protein sequence
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load co
n
don to AA table
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load codon to AA table
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build conversion function between codon and AA
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build conversion function for a sequence function
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use list as hashing table
...
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