From 66a21c8ab5ac87f41c0b620175f41e6f89aeccc8 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Tue, 8 Oct 2019 10:24:39 +0200 Subject: [PATCH] README.md: update session 1 & 2 --- README.md | 21 ++++++++++++++++----- 1 file changed, 16 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 1afce6e..57c3a71 100644 --- a/README.md +++ b/README.md @@ -1,11 +1,22 @@ # R formation -## session 1 +## Session 1 +Introduction to R and RStudio +- R introduction +- RStudio interface +- numerical operation +- data structure +- functions +- R packages +- Examples + +## Session 2 +Introduction to tidyverse In this session we play-back the steps of the creation of an Exel table - numerical variable creation -- numerical opperations -- string creatation +- numerical operations +- string creation - variable concatenation and variable type: paste0, typeof - vector : lenght, head, summary - data.frame : dim, ncol, nrow @@ -13,7 +24,7 @@ In this session we play-back the steps of the creation of an Exel table - list ## session 2 -In this session we extract the list of differentillay expressed genes from a +In this session we extract the list of differentially expressed genes from a DESeq2 .csv output. We then extract only the up-regulated and down-regulated genes. @@ -40,7 +51,7 @@ Conversion of a fasta file into a GTF file ## session n+1 Converting a nucleotide sequence into a protein sequence -- load condon to AA table +- load codon to AA table - build conversion function between codon and AA - build conversion function for a sequence function - use list as hashing table -- GitLab