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Commit 7648bcd9 authored by Arnaud Duvermy's avatar Arnaud Duvermy
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add dockerfile v1.0.0

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FROM r-base:4.3.1
RUN apt-get -y update && \
apt-get -y install cmake libxml2-dev
RUN wget http://gitbio.ens-lyon.fr/aduvermy/HTRfit/-/archive/v1.0.0/HTRfit-v1.0.0.tar && \
tar -xf /HTRfit-v1.0.0.tar && \
R -e "install.packages(c('car', 'parallel', 'data.table', 'ggplot2', 'gridExtra', 'glmmTMB', 'magrittr', 'MASS', 'plotROC', 'reshape2', 'rlang', 'stats', 'utils', 'BiocManager'))" && \
R -e "BiocManager::install('S4Vectors', update = FALSE)" && \
R -e "install.packages('/HTRfit-v1.0.0', repos = NULL, type='source')"
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