Commit a5141a5c authored by Xavier Grand's avatar Xavier Grand
Browse files

Modif Channel idx_genome.

parent 6154458f
......@@ -146,7 +146,7 @@ workflow {
else {
idx_genome = "${params.idx}"
Channel
.fromPath( idx_genome, type: 'dir' )
.of( idx_genome )
.set { genome_indexed_input }
mapping_withindex(genome_indexed_input.collect(), fastp.out.fastq)
stats_bam(mapping_withindex.out.bam)
......
......@@ -31,7 +31,7 @@ process htseq_count {
}
input:
tuple val(file_id), path(bam), path(bai)
path (gtf)
val(gtf)
output:
path "${file_id}.tsv", emit: counts
......
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