Modif Channel idx_genome.

src/RNAseq_XGR.nf

@@ -146,7 +146,7 @@ workflow {
   else {
     idx_genome = "${params.idx}"
     Channel
-      .fromPath( idx_genome, type: 'dir' )
+      .of( idx_genome )
       .set { genome_indexed_input }
     mapping_withindex(genome_indexed_input.collect(), fastp.out.fastq)
     stats_bam(mapping_withindex.out.bam)

src/nf_modules/htseq/main.nf

@@ -31,7 +31,7 @@ process htseq_count {
     }
     input:
       tuple val(file_id), path(bam), path(bai)
-      path (gtf)
+      val(gtf)
 
     output:
       path "${file_id}.tsv", emit: counts