Commit 6154458f authored by Xavier Grand's avatar Xavier Grand
Browse files

Modif Channel idx_genome.

parent 000f31c5
......@@ -146,9 +146,8 @@ workflow {
else {
idx_genome = "${params.idx}"
Channel
.of( idx_genome )
.fromPath( idx_genome, type: 'dir' )
.set { genome_indexed_input }
genome_indexed_input.view()
mapping_withindex(genome_indexed_input.collect(), fastp.out.fastq)
stats_bam(mapping_withindex.out.bam)
filter_bam_mapped(mapping_withindex.out.bam)
......
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